Difference between revisions of "Massmine"

From UFRC
Jump to navigation Jump to search
m (Text replacement - "/ufrc" to "/blue")
 
(10 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 +
[[Category:Software]]
 
== Using MassMine on Research Computing ==
 
== Using MassMine on Research Computing ==
 
[http://www.massmine.org MassMine], and a data filtering program called [https://github.com/n3mo/jsan jsan] (the '''J'''SON '''S'''wiss '''A'''rmy k'''N'''ife) are installed on Research Computing.
 
[http://www.massmine.org MassMine], and a data filtering program called [https://github.com/n3mo/jsan jsan] (the '''J'''SON '''S'''wiss '''A'''rmy k'''N'''ife) are installed on Research Computing.
  
Prior to getting started with MassMine, please read UFRC's [http://wiki.hpc.ufl.edu/doc/Getting_Started Getting Started] page and follow the instructions on UFRC's [http://wiki.hpc.ufl.edu/doc/FileZilla FileZilla] page. If you do not already have FileZilla installed, please download and install the software by visiting [https://filezilla-project.org/ filezilla-project.org].
+
Prior to getting started with MassMine, please read UFRC's [http://wiki.rc.ufl.edu/doc/Getting_Started Getting Started] page and follow the instructions on UFRC's [http://wiki.rc.ufl.edu/doc/FileZilla FileZilla] page. If you do not already have FileZilla installed, please download and install the software by visiting [https://filezilla-project.org/ filezilla-project.org].
  
  
MassMine should generally be run a [[Daemons|daemon]] node. This can be done connecting to daemon after logging into HiPerGator:
+
(1) Open a terminal and run
 +
 
 +
<code>
 +
ssh <YOUR_USERNAME>@hpg.rc.ufl.edu
 +
</code>
 +
 
 +
 
 +
(2) MassMine should generally be run a [[Daemons|daemon]] node. This can be done connecting to daemon after logging into HiPerGator:
  
 
<code>
 
<code>
Line 12: Line 20:
  
  
After logging in, MassMine users should change to their /ufrc directory. Be sure to change <code>groupname</code> and <code>username</code> to your individual username for Research Computing. This username may be different from your UF username. Type the following command into the terminal to change to your scratch directory:
+
(3) After logging in, MassMine users should change to their /blue directory. Be sure to change <code>groupname</code> and <code>username</code> to your individual username for Research Computing. This username may be different from your UF username. Type the following command into the terminal to change to your scratch directory:
  
 
<code>
 
<code>
cd /ufrc/groupname/username
+
cd /blue/groupname/username
 
</code>
 
</code>
  
  
Before using MassMine, you must load it as a module:
+
(4) Before using MassMine, you must load it as a module:
  
 
<code>
 
<code>
 
module load massmine
 
module load massmine
 
</code>
 
</code>
 +
  
 
To use an older versions of MassMine add the version number to the end of the command with <code>module load massmine/x.x.x</code>. This will allow you to load a specific version of massmine.  
 
To use an older versions of MassMine add the version number to the end of the command with <code>module load massmine/x.x.x</code>. This will allow you to load a specific version of massmine.  

Latest revision as of 19:22, 11 February 2021

Using MassMine on Research Computing

MassMine, and a data filtering program called jsan (the JSON Swiss Army kNife) are installed on Research Computing.

Prior to getting started with MassMine, please read UFRC's Getting Started page and follow the instructions on UFRC's FileZilla page. If you do not already have FileZilla installed, please download and install the software by visiting filezilla-project.org.


(1) Open a terminal and run

ssh <YOUR_USERNAME>@hpg.rc.ufl.edu


(2) MassMine should generally be run a daemon node. This can be done connecting to daemon after logging into HiPerGator:

ssh daemon


(3) After logging in, MassMine users should change to their /blue directory. Be sure to change groupname and username to your individual username for Research Computing. This username may be different from your UF username. Type the following command into the terminal to change to your scratch directory:

cd /blue/groupname/username


(4) Before using MassMine, you must load it as a module:

module load massmine


To use an older versions of MassMine add the version number to the end of the command with module load massmine/x.x.x. This will allow you to load a specific version of massmine.

After loading MassMine as a module, both massmine and jsan become available for use. You can double check this by checking the version of each program:

massmine --version

jsan --version

For help with using massmine, visit the official massmine website. For help with jsan, see the online documentation.