Difference between revisions of "Massmine"

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== Using MassMine on Research Computing ==
 
== Using MassMine on Research Computing ==
[http://www.massmine.org MassMine], and a data filtering program called [https://github.com/n3mo/jsan jsan] (the '''J'''SON '''S'''wiss '''A'''rmy k'''N'''ife) are installed on Research Computing. Before using these tools, you must load the appropriate module:
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[http://www.massmine.org MassMine], and a data filtering program called [https://github.com/n3mo/jsan jsan] (the '''J'''SON '''S'''wiss '''A'''rmy k'''N'''ife) are installed on Research Computing.
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Prior to getting started with MassMine, please read UFRC's [http://wiki.hpc.ufl.edu/doc/Getting_Started Getting Started] page and follow the instructions on UFRC's [http://wiki.hpc.ufl.edu/doc/FileZilla FileZilla] page. If you do not already have FileZilla installed, please download and install the software by visiting [https://filezilla-project.org/ filezilla-project.org].
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After logging in, MassMine users must change to their scratch directory. Be sure to change <code>username</code> to your individual username for Research Computing. This username may be different from your UF username. Type the following command into the terminal to change to your scratch directory:
 +
 
 +
<code>
 +
cd /scratch/lfs/username
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</code>
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Before using MassMine, you must load it as a module:
  
 
<code>
 
<code>
module load massmine/0.9.5
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module load massmine
 
</code>
 
</code>
  
Other versions of MassMine will follow the same convention, with <code>module load massmine/x.x.x</code> loading massmine version x.x.x
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To use an older versions of MassMine add the version number to the end of the command with <code>module load massmine/x.x.x</code>. This will allow you to load a specific version of massmine.  
  
After loading the required module, both <code>massmine</code> and <code>jsan</code> become available for use. You can double check this by checking the version of each program:
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After loading MassMine as a module, both <code>massmine</code> and <code>jsan</code> become available for use. You can double check this by checking the version of each program:
  
 
<code>
 
<code>

Revision as of 19:40, 8 September 2015

Using MassMine on Research Computing

MassMine, and a data filtering program called jsan (the JSON Swiss Army kNife) are installed on Research Computing.

Prior to getting started with MassMine, please read UFRC's Getting Started page and follow the instructions on UFRC's FileZilla page. If you do not already have FileZilla installed, please download and install the software by visiting filezilla-project.org.

After logging in, MassMine users must change to their scratch directory. Be sure to change username to your individual username for Research Computing. This username may be different from your UF username. Type the following command into the terminal to change to your scratch directory:

cd /scratch/lfs/username

Before using MassMine, you must load it as a module:

module load massmine

To use an older versions of MassMine add the version number to the end of the command with module load massmine/x.x.x. This will allow you to load a specific version of massmine.

After loading MassMine as a module, both massmine and jsan become available for use. You can double check this by checking the version of each program:

massmine --version

jsan --version

For help with using massmine, visit the official massmine website. For help with jsan, see the online documentation.