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maftools website  

mafTools is a collection of tools that operate on Multiple Alignment Format (maf) files.

Environment Modules

Run module spider maftools to find out what environment modules are available for this application.

System Variables

  • HPC_MAFTOOLS_DIR - installation directory
  • HPC_MAFTOOLS_BIN - executalbe directory


If you publish research that uses maftools you have to cite it as follows:

Genome Res. 2014 Dec;24(12):2077-89. doi: 10.1101/gr.174920.114. Epub 2014 Oct 1. Alignathon: a competitive assessment of whole-genome alignment methods.