Revision as of 21:00, 10 September 2012 by Yingz (talk | contribs) (Created page with "__NOTOC__ __NOEDITSECTION__ Category:SoftwareCategory:Molecular Dynamics {|<!--Main settings - REQUIRED--> |{{#vardefine:app|msmbuilder}} |{{#vardefine:url|https://sim...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search


msmbuilder website  

MSMBuilder is an open source software package for automating the construction and analysis of Markov state models (MSMs). It is primarily written in the python programming language with C extensions for the most time consuming routines. MSMs are a powerful means of modeling the structure and dynamics of molecular systems, like proteins.

Required Modules

modules documentation


  • msmbuilder

System Variables

  • HPC_{{#uppercase:msmbuilder}}_DIR - installation directory

Additional Information

To run the graphical interface of molden, please connect to an interactive node.