Difference between revisions of "MHAP"
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==System Variables== | ==System Variables== | ||
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 16:15, 10 June 2022
Description
MHAP (pronounced MAP) is a reference implementation of a probabilistic sequence overlapping algorithm. Designed to efficiently detect all overlaps between noisy long-read sequence data. It efficiently estimates Jaccard similarity by compressing sequences to their representative fingerprints composed on min-mers (minimum k-mer).
Environment Modules
Run module spider mhap to find out what environment modules are available for this application.
System Variables
- HPC_MHAP_DIR - installation directory