Difference between revisions of "MEME"

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(Created page with "Category:SoftwareCategory:BiologyCategory:BioinformaticsCategory:Sequence {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|meme}} |{{#vardefine:url|http://me...")
 
 
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[[Category:Software]][[Category:Biology]][[Category:Bioinformatics]][[Category:Sequence]]
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[[Category:Software]][[Category:Biology]][[Category:Bioinformatics]][[Category:Sequencing]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|meme}}
 
|{{#vardefine:app|meme}}
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{{#if: {{#var: url}}|
 
{{#if: {{#var: url}}|
 
{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}}
 
{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}}
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The MEME Suite allows you to:
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* Discover motifs using MEME or GLAM2 on groups of related DNA or protein sequences.
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* Search sequence databases using motifs.
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* Compare a motif to all motifs in a database of motifs, and.
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* Associate motifs with Gene Ontology terms via their putative target genes.
  
MEME discovers novel, ungapped motifs (recurring, fixed-length patterns) in your sequences. MEME splits variable-length patterns into two or more separate motifs.
 
  
 
<!--Modules-->
 
<!--Modules-->
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
* HPC_{{#uppercase:{{#var:app}}}}_DOC - documentation directory
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* HPC_{{uc:{{#var:app}}}}_DOC - documentation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 15:09, 27 May 2022

Description

meme website  
The MEME Suite allows you to:

  • Discover motifs using MEME or GLAM2 on groups of related DNA or protein sequences.
  • Search sequence databases using motifs.
  • Compare a motif to all motifs in a database of motifs, and.
  • Associate motifs with Gene Ontology terms via their putative target genes.


Environment Modules

Run module spider meme to find out what environment modules are available for this application.

System Variables

  • HPC_MEME_DIR - installation directory
  • HPC_MEME_BIN - executable directory
  • HPC_MEME_DOC - documentation directory