Difference between revisions of "MATS"

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==System Variables==
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_MATS_BIN - executable directory
* HPC_MATS_BIN - executable directory

Revision as of 21:21, 6 December 2019


mats website  

MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data. The statistical model of MATS calculates the P-value and false discovery rate that the difference in the isoform ratio of a gene between two conditions exceeds a given user-defined threshold. From the RNA-Seq data, MATS can automatically detect and analyze alternative splicing events corresponding to all major types of alternative splicing patterns.

Required Modules

modules documentation


  • mats

System Variables

  • HPC_MATS_DIR - installation directory
  • HPC_MATS_BIN - executable directory


  • Validated 4/5/2018