Difference between revisions of "MAFFT"

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Revision as of 20:38, 23 February 2018


mafft website  

MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼10,000 sequences), etc.

Required Modules

modules documentation


  • mafft

System Variables

  • HPC_{{#uppercase:mafft}}_DIR - installation directory

Additional Information

MAFFT is compiled to run on multiple cores, use the --thread <cores> option to specify the number of cores to use. Make sure that this number corresponds to the resources requested in your #PBS -l nodes=1:ppn=<cores> statement.