Difference between revisions of "MAFFT"

From UFRC
Jump to navigation Jump to search
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
+
[[Category:Software]][[Category:Biology]][[Category:Sequencing]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|mafft}}
 
|{{#vardefine:app|mafft}}

Latest revision as of 20:23, 15 August 2022

Description

mafft website  

MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼10,000 sequences), etc.

Environment Modules

Run module spider mafft to find out what environment modules are available for this application.

System Variables

  • HPC_MAFFT_DIR - installation directory

Additional Information

MAFFT is compiled to run on multiple cores, use the --thread <cores> option to specify the number of cores to use. Make sure that this number corresponds to the resources requested in your #PBS -l nodes=1:ppn=<cores> statement.