Difference between revisions of "MAFFT"

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m (Moskalenko moved page Mafft to MAFFT: Sync with the naming in modules)
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*{{#var:app}}
 
*{{#var:app}}
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
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{{#if: {{#var: exe}}|==Additional Information==
 
{{#if: {{#var: exe}}|==Additional Information==

Latest revision as of 21:21, 6 December 2019

Description

mafft website  

MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼10,000 sequences), etc.

Required Modules

modules documentation

Serial

  • mafft

System Variables

  • HPC_MAFFT_DIR - installation directory

Additional Information

MAFFT is compiled to run on multiple cores, use the --thread <cores> option to specify the number of cores to use. Make sure that this number corresponds to the resources requested in your #PBS -l nodes=1:ppn=<cores> statement.