Difference between revisions of "M5nr"

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[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
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[[Category:Software]][[Category:Biology]][[Category:Genomics]]
 
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{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|m5nr}}
 
|{{#vardefine:app|m5nr}}
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<!--Modules-->
 
<!--Modules-->
==Required Modules==
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==Environment Modules==
===Serial===
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 19:46, 12 August 2022


Description

m5nr website  

The M5NR is an integration of many sequence databases into one single, searchable database (plus an index). A single similarity search (using BLAST or BLAT) will allow the user to retrieve similarities to several databases (e.g. NCBI’s nr, KEGGs database or the EGGnogs — see below for a complete list).

Environment Modules

Run module spider m5nr to find out what environment modules are available for this application.

System Variables

  • HPC_M5NR_DIR - installation directory