Difference between revisions of "M5nr"
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[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] | [[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]] | ||
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{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|m5nr}} | |{{#vardefine:app|m5nr}} | ||
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 20:07, 10 June 2022
Description
The M5NR is an integration of many sequence databases into one single, searchable database (plus an index). A single similarity search (using BLAST or BLAT) will allow the user to retrieve similarities to several databases (e.g. NCBI’s nr, KEGGs database or the EGGnogs — see below for a complete list).
Environment Modules
Run module spider m5nr to find out what environment modules are available for this application.
System Variables
- HPC_M5NR_DIR - installation directory