Difference between revisions of "LMAP"

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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
* HPC_{{#uppercase:{{#var:app}}}}_DOC - documentation directory
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* HPC_{{uc:{{#var:app}}}}_DOC - documentation directory
* HPC_{{#uppercase:{{#var:app}}}}_EXE - example directory
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* HPC_{{uc:{{#var:app}}}}_EXE - example directory
  
 
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Latest revision as of 21:21, 6 December 2019

Description

lmap website  

A package of user-friendly terminal/command-line and interactive applications developed in Perl, to enable the high-throughput analyses of multiple genes/datasets in PAML (codeml). LMAP was designed for the workstation multi-core environment and enables all the codeml codon substitutions models: site models, branch models, branch-site models and clade models.

Environment Modules

Run module spider lmap to find out what environment modules are available for this application.

System Variables

  • HPC_LMAP_DIR - installation directory
  • HPC_LMAP_BIN - executable directory
  • HPC_LMAP_DOC - documentation directory
  • HPC_LMAP_EXE - example directory




Citation

If you publish research that uses lmap you have to cite it as follows:

Emanuel Maldonado, Daniela Almeida, Tibisay Escalona, Imran Khan, Vitor Vasconcelos and Agostinho Antunes LMAP: Lightweight Multigene Analyses in PAML BMC Bioinformatics (2016), 17:354. DOI