LDhat
Jump to navigation
Jump to search
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.
Description
LDhat is a package written in the C and C++ languages for the analysis of recombination rates from population genetic data. The package is available either as C/C++ source code.
Environment Modules
Run module spider ldhat to find out what environment modules are available for this application.
System Variables
- HPC_LDHAT_DIR - installation directory
Additional Information
The following programs are included:
- convert: Simple manipulation of DNA sequence data
- pairwise: Parametric and nonparametric analyses of recombination
- interval: Estimation of variable recombination rates
- rhomap: Estimation of variable recombination rates in the presence of hotspots
- fin: Simulation of genetic variation data in LDhat format