Difference between revisions of "Kvarq"
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Latest revision as of 15:26, 21 June 2023
Usage
ml kvarq
DESCRIPTION
KvarQ: Targeted and direct variant calling in FastQ reads of bacterial genomes The program KvarQ performs rapid in silico genotyping for selected loci (e.g. phylogenetic SNPs, drug resistance mutations) in bacterial genome sequences in FastQ format. Mapping to a whole-genome reference sequence or de novo assembly or the short reads is not necessary.
Environment Modules
Run module spider
to find out what environment modules are available for this application.
System Variables
- HPC__DIR - installation directory