Difference between revisions of "Jutils"

Latest revision as of 13:30, 15 August 2022

Description

Jutils is a visualization toolkit for alternative splicing events. It uses an intermediate tab separated file (TSV) to represent alternative splicing data such as that generated by a differential splicing prediction program. Jutils supports the vizualization of results generated by popular differential splicing (DS) prediction tools MntJULiP, LeafCutter, MAJIQ and rMATS. Additionally, users can write their own routines to convert the output of any other DS program into the unified TSV data format, which can then be visualized with Jutils.

Environment Modules

Run module spider Jutils to find out what environment modules are available for this application.

System Variables

HPC_JUTILS_DIR - installation directory
HPC_JUTILS_BIN - executable directory

Usage Examples

$ module load jutils/1.0
$ jutils.py -h
usage: jutils.py [-h] {convert-results,venn-diagram,heatmap,sashimi} ...

positional arguments:
  {convert-results,venn-diagram,heatmap,sashimi}
                        commands
    venn-diagram
    heatmap
    sashimi

optional arguments:
  -h, --help            show this help message and exit

@@ Line 1: / Line 1: @@
-[[Category:Software]][[Category:Phylogenomics‏‎]][[Category:Biology]]
+[[Category:Software]][[Category:genomics‏‎]][[Category:Biology]]
 {|<!--CONFIGURATION: REQUIRED-->
 |{{#vardefine:app|Jutils}}