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juicer website  

Juicer is a platform for analyzing kilobase resolution Hi-C data. In this distribution, we include the pipeline for generating Hi-C maps from fastq raw data files and command line tools for feature annotation on the Hi-C maps.

Environment Modules

Run module spider juicer to find out what environment modules are available for this application.

System Variables

  • HPC_{{#uppercase:juicer}}_DIR - installation directory
  • HPC_{{#uppercase:juicer}}_BIN - executable directory