Difference between revisions of "Jasmine"
Jump to navigation
Jump to search
(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|jasmine}} |{{#vardefine:url|https://github.com/mkirsche/Jasmine}} <!--CONFIGURATION: OPTIONAL (|1}} me...") |
|||
| Line 1: | Line 1: | ||
| − | [[Category:Software]] | + | [[Category:Software]][[Category:Phylogenetics]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|jasmine}} | |{{#vardefine:app|jasmine}} | ||
Latest revision as of 19:09, 15 August 2022
Description
This tool is used to merge structural variants (SVs) across samples. Each sample has a number of SV calls, consisting of position information (chromosome, start, end, length), type and strand information, and a number of other values. Jasmine represents the set of all SVs across samples as a network, and uses a modified minimum spanning forest algorithm to determine the best way of merging the variants such that each merged variants represents a set of analogous variants occurring in different samples.
Environment Modules
Run module spider jasmine to find out what environment modules are available for this application.
System Variables
- HPC_JASMINE_DIR - installation directory
- HPC_JASMINE_BIN - executable directory