Difference between revisions of "InterProScan"

From UFRC
Jump to navigation Jump to search
m (Moskalenko moved page Iprscan to InterProScan: module whatis rename)
 
(2 intermediate revisions by 2 users not shown)
Line 1: Line 1:
[[Category:Software]][[Category:Bioinformatics]]
+
[[Category:Software]][[Category:Biology]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|iprscan}}
 
|{{#vardefine:app|iprscan}}
Line 24: Line 24:
  
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
[[Modules|modules documentation]]
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
*{{#var:app}}
 
<!--Add additional HPC_FOO_BIN and other ENV VARIABLES below-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Run-->
 
<!--Run-->
  

Latest revision as of 19:23, 12 August 2022

Description

iprscan website  

This interproscan software allows you to query your sequence against the InterPro databases.

Environment Modules

Run module spider iprscan to find out what environment modules are available for this application.

System Variables

  • HPC_IPRSCAN_DIR - installation directory

How To Run

Interproscan 5 series is run differently from the "4.x" series. See https://code.google.com/p/interproscan/wiki/i5RC6HowToRun for details or load the module and run "interproscan.sh". To set the amount of memory Interproscan can use set the "_JAVA_OPTIONS" variable to a value different from the default 2048M, e.g. '$ export _JAVA_OPTIONS="-Xmx8192M"'