Difference between revisions of "InterProScan"
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{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} | ||
| − | This software allows you to query your sequence against the InterPro databases. | + | This interproscan software allows you to query your sequence against the InterPro databases. |
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<!--Add additional HPC_FOO_BIN and other ENV VARIABLES below--> | <!--Add additional HPC_FOO_BIN and other ENV VARIABLES below--> | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Run--> | <!--Run--> | ||
Revision as of 21:21, 6 December 2019
Description
This interproscan software allows you to query your sequence against the InterPro databases.
Required Modules
Serial
- iprscan
System Variables
- HPC_IPRSCAN_DIR - installation directory
How To Run
Interproscan 5 series is run differently from the "4.x" series. See https://code.google.com/p/interproscan/wiki/i5RC6HowToRun for details or load the module and run "interproscan.sh". To set the amount of memory Interproscan can use set the "_JAVA_OPTIONS" variable to a value different from the default 2048M, e.g. '$ export _JAVA_OPTIONS="-Xmx8192M"'