Difference between revisions of "Installed Software"

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! Software !! Version !! Home Website
 
! Software !! Version !! Home Website
 
|-
 
|-
−
| [[Amber]] || 9,10 || [http://amber.scripps.edu/ amber.scripps.edu]
+
| [[Abaqus]] || 6.6-1, 6.9-2 ||
 +
|-
 +
| [[ADMB]] || 9.1, 10.0 ||
 +
|-
 +
| [[Amber]] || 8,9,10,11 || [http://amber.scripps.edu/ amber.scripps.edu]
 
|-
 
|-
 
| [[Ansys]] || 10.0 || [http://www.ansys.com/ www.ansys.com]
 
| [[Ansys]] || 10.0 || [http://www.ansys.com/ www.ansys.com]
 +
|-
 +
| [[antlr]] || 3.1.3 ||
 +
|-
 +
| [[bioscope]] || 1.0.1, 1.2.1 ||
 +
|-
 +
| [[Blast]] || 2.2.24 ||
 +
|-
 +
| [[Boost]] || 1.37.0, 1.46.1 ||
 +
|-
 +
| [[Charmm]] || 35b2 ||
 +
|-
 +
| [[Circuit]] ||   ||
 +
|-
 +
| [[CPMD]] || 3.11.1 || [http://www.cpmd.org/ www.cpmd.org]
 
|-
 
|-
 
| [[Crystal]] || 1.0.2 ||  
 
| [[Crystal]] || 1.0.2 ||  
 
|-
 
|-
−
| [[CPMD]] || 3.11.1 || [http://www.cpmd.org/ www.cpmd.org]
+
| [[dar]] || 2.3.9 ||
 +
|-
 +
| [[denovo]] || 2.5.3, 2.6 ||
 
|-
 
|-
 
| [[Desmond]] || 2.4.2.1 || [http://www.deshawresearch.com/resources_desmond.html www.deshawresearch.com/resources_desmond.html]
 
| [[Desmond]] || 2.4.2.1 || [http://www.deshawresearch.com/resources_desmond.html www.deshawresearch.com/resources_desmond.html]
Line 16: Line 36:
 
| [[dlpoly]] || 3.0.9 || [http://www.cse.clrc.ac.uk/ccg/software/DL_POLY/index.shtml www.cse.clrc.ac.uk]
 
| [[dlpoly]] || 3.0.9 || [http://www.cse.clrc.ac.uk/ccg/software/DL_POLY/index.shtml www.cse.clrc.ac.uk]
 
|-
 
|-
−
| [[dock]] || 6.2 || [http://dock.compbio.ucsf.edu/ dock.compbio.ucsf.edu]
+
| [[dock]] || 6.3, 6.4 || [http://dock.compbio.ucsf.edu/ dock.compbio.ucsf.edu]
 +
|-
 +
| [[espresso]] || 3.0, 3.2.2, 4.0.4 ||
 +
|-
 +
| [[fluent]] || 6.3.26 ||
 +
|-
 +
| [[gadget]] || 2.0.4, 2.0.5 ||
 
|-
 
|-
 
| [[gaussian]] || 03,09 || [http://www.gaussian.com/ www.gaussian.com]
 
| [[gaussian]] || 03,09 || [http://www.gaussian.com/ www.gaussian.com]
 
|-
 
|-
−
| [[Gromacs]] || 4.0.4,4.0.7 || [http://www.gromacs.org/ www.gromacs.org]
+
| [[Gromacs]] || 4.0.4, 4.0.7 || [http://www.gromacs.org/ www.gromacs.org]
 
|-
 
|-
 
| [[hypre]] || 2.0.0 || [http://www.llnl.gov/casc/hypre/software.html Lawrence Livermore National Labs]
 
| [[hypre]] || 2.0.0 || [http://www.llnl.gov/casc/hypre/software.html Lawrence Livermore National Labs]
 +
|-
 +
| [[Inelastica]] || 1.1 ||
 +
|-
 +
| [[madness]] ||   ||
 
|-
 
|-
 
| [[Matlab]] || 2009b || [http://www.mathworks.com www.mathworks.com]
 
| [[Matlab]] || 2009b || [http://www.mathworks.com www.mathworks.com]
 +
|-
 +
| [[meep]] || 0.10.0, 0.20.3 ||
 +
|-
 +
| [[meme]] || 3.0.13, 4.3.0 ||
 
|-
 
|-
 
| [[metis]] || 4.0 || [http://glaros.dtc.umn.edu/gkhome/views/metis glaros.dtc.umn.edu]
 
| [[metis]] || 4.0 || [http://glaros.dtc.umn.edu/gkhome/views/metis glaros.dtc.umn.edu]
 +
|-
 +
| [[mira]] || 3.2.0 ||
 
|-
 
|-
 
| [[MrBayes]] || 3.1.2 || [http://mrbayes.scs.fsu.edu/ mrbayes.scs.fsu.edu]
 
| [[MrBayes]] || 3.1.2 || [http://mrbayes.scs.fsu.edu/ mrbayes.scs.fsu.edu]
 
|-
 
|-
 
| [[NAMD]] || 2.7b2 || [http://www.ks.uiuc.edu/Research/namd/ www.ks.uiuc.edu]
 
| [[NAMD]] || 2.7b2 || [http://www.ks.uiuc.edu/Research/namd/ www.ks.uiuc.edu]
 +
|-
 +
| [[netcdf]] || 3.6.3, 4.1.2 ||
 
|-
 
|-
 
| [[NWChem]] || 6.0 || [http://www.nwchem-sw.org/index.php/Main_Page http://www.nwchem-sw.org]
 
| [[NWChem]] || 6.0 || [http://www.nwchem-sw.org/index.php/Main_Page http://www.nwchem-sw.org]
 
|-
 
|-
−
| [[Rosetta]] || 2.1.2 || [https://www.rosettacommons.org/ www.rosettacommons.org]
+
| [[OpenFOAM]] || 1.7.1 ||  
 +
|-
 +
| [[papi]] || 4.1.2.1 ||
 +
|-
 +
| [[pdt]] || 3.16 ||
 
|-
 
|-
−
| [[R]] || 2.8.1 || [http://www.r-project.org www.r-project.org]
+
| [[petsc]] || 2.3.3-p8, 3.0.0-p12 ||
 
|-
 
|-
−
| [[SAS]] || 9.1 || [http://www.sas.com SAS]
+
| [[pqs]] || 3.3-19 ||
 
|-
 
|-
−
| [[Siesta]] || 2.0 || [http://www.uam.es/departamentos/ciencias/fismateriac/siesta/ www.uam.es]
+
| [[pyopencl]] || 0.92 ||
 +
|-
 +
| [[python]] || 2.5.1, 2.6.4, 2.6.5 ||
 +
|-
 +
| [[Rosetta]] || 2.1.1, 2.1.2 || [https://www.rosettacommons.org/ www.rosettacommons.org]
 +
|-
 +
| [[rsm]] || 2961 ||
 +
|-
 +
| [[SAS]] || 9.1, 9.2 || [http://www.sas.com SAS]
 +
|-
 +
| [[Siesta]] || 2.0, 2.0.2, 3.0b || [http://www.uam.es/departamentos/ciencias/fismateriac/siesta/ www.uam.es]
 
|-
 
|-
 
| [[Stata]] || 10 || [http://www.stata.com/ Stata]
 
| [[Stata]] || 10 || [http://www.stata.com/ Stata]
 +
|-
 +
| [[tau]] || 2.20.1 ||
 +
|-
 +
| [[tuxedo]] ||   ||
 
|-
 
|-
 
| [[VASP]] || 4.6.34,5.2.0 || [http://cms.mpi.univie.ac.at/vasp/ cms.mpi.univie.ac.at]
 
| [[VASP]] || 4.6.34,5.2.0 || [http://cms.mpi.univie.ac.at/vasp/ cms.mpi.univie.ac.at]
 
|-
 
|-
 +
| [[vmd]] || 1.9 ||
 +
|-
 +
| [[weka]] || 3.6.2 ||
 
|}
 
|}
  
 
* Many versions available.  <code>/scratch/ufhpc/osg/app/etc/grid3-locations.txt</code> may have an up-to-date list.  Or look underneath <code>/scratch/ufhpc/osg/app/cmssoft</code>.
 
* Many versions available.  <code>/scratch/ufhpc/osg/app/etc/grid3-locations.txt</code> may have an up-to-date list.  Or look underneath <code>/scratch/ufhpc/osg/app/cmssoft</code>.

Revision as of 15:13, 15 June 2011

The following is a list of the installed software packages maintained at the UF HPC Center

Software

Software Version Home Website
Abaqus 6.6-1, 6.9-2
ADMB 9.1, 10.0
Amber 8,9,10,11 amber.scripps.edu
Ansys 10.0 www.ansys.com
antlr 3.1.3
bioscope 1.0.1, 1.2.1
Blast 2.2.24
Boost 1.37.0, 1.46.1
Charmm 35b2
Circuit  
CPMD 3.11.1 www.cpmd.org
Crystal 1.0.2  
dar 2.3.9
denovo 2.5.3, 2.6
Desmond 2.4.2.1 www.deshawresearch.com/resources_desmond.html
dlpoly 3.0.9 www.cse.clrc.ac.uk
dock 6.3, 6.4 dock.compbio.ucsf.edu
espresso 3.0, 3.2.2, 4.0.4
fluent 6.3.26
gadget 2.0.4, 2.0.5
gaussian 03,09 www.gaussian.com
Gromacs 4.0.4, 4.0.7 www.gromacs.org
hypre 2.0.0 Lawrence Livermore National Labs
Inelastica 1.1
madness  
Matlab 2009b www.mathworks.com
meep 0.10.0, 0.20.3
meme 3.0.13, 4.3.0
metis 4.0 glaros.dtc.umn.edu
mira 3.2.0
MrBayes 3.1.2 mrbayes.scs.fsu.edu
NAMD 2.7b2 www.ks.uiuc.edu
netcdf 3.6.3, 4.1.2
NWChem 6.0 http://www.nwchem-sw.org
OpenFOAM 1.7.1
papi 4.1.2.1
pdt 3.16
petsc 2.3.3-p8, 3.0.0-p12
pqs 3.3-19
pyopencl 0.92
python 2.5.1, 2.6.4, 2.6.5
Rosetta 2.1.1, 2.1.2 www.rosettacommons.org
rsm 2961
SAS 9.1, 9.2 SAS
Siesta 2.0, 2.0.2, 3.0b www.uam.es
Stata 10 Stata
tau 2.20.1
tuxedo  
VASP 4.6.34,5.2.0 cms.mpi.univie.ac.at
vmd 1.9
weka 3.6.2
  • Many versions available. /scratch/ufhpc/osg/app/etc/grid3-locations.txt may have an up-to-date list. Or look underneath /scratch/ufhpc/osg/app/cmssoft.
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