Difference between revisions of "Installed Software"

Revision as of 21:08, 30 May 2008

The following is a list of the installed software packages maintained at the UF HPC Center

Software	Version	Home Website
Abaqus	6.6-1	www.abaqus.com
Adina	8.3	www.adina.com
Amber	9	amber.scripps.edu
Ansys	10.0	www.ansys.com
AUTO3DEM	3.05	cryoem.ucsd.edu
Blender	2.45	www.blender.org
ccp4	6.0.2	www.ccp4.ac.uk
CMSSW	2_0_6	CMS Software Twiki
cnssolve	1.2	cns.csb.yale.edu
Crystal	1.0.2
CPMD	3.11.1	www.cpmd.org;
dlpoly	3.0.7	www.cse.clrc.ac.uk
dock	6.1	dock.compbio.ucsf.edu
Eman	1.8	blake.bcm.tms.edu
Ensight	8.2	www.ensight.com
Fragstats	2.0	www.umass.edu
FSL	3.3.11	www.fmrib.ox.ac.uk
Garli	0.942	Garli
gaussian	03	www.gaussian.com
Geant	4.8.2	geant4.web.cern.ch
Gromacs	3.3.1	www.gromacs.org
GULP	3.1	www.ivec.org
hypre	2.0.0	Lawrence Livermore National Labs
Matlab	7.6	www.mathworks.com
meme	3.0.13	meme.sdsc.edu
metis	4.0	glaros.dtc.umn.edu
mpiBlast	1.5.0	NCBI
MrBayes	3.1.2	mrbayes.scs.fsu.edu
NAMD	2.6	www.ks.uiuc.edu
PWscf	3.0	www.pwscf.org
Rosetta	2.1.2	www.rosettacommons.org
R	2.5.0	www.r-project.org
SAS	9.1	SAS
Siesta	2.0	www.uam.es
Stata	10	Stata
VASP	4.6.28	cms.mpi.univie.ac.at

Library	Version	Compiler	Location
FFTW	2.1.5	Intel	/opt/intel/fftw/2.1.5/lib

@@ Line 23: / Line 23: @@
 |-
 | [[Crystal]] || 1.0.2 || &nbsp;
+|-
+| [[CPMD]] || 3.11.1 || [http://www.cpmd.org/ www.cpmd.org];
 |-
 | [[dlpoly]] || 3.0.7 || [http://www.cse.clrc.ac.uk/ccg/software/DL_POLY/index.shtml www.cse.clrc.ac.uk]
@@ Line 35: / Line 37: @@
 |-
 | [[FSL]] || 3.3.11 || [http://www.fmrib.ox.ac.uk/fsl/ www.fmrib.ox.ac.uk]
+|-
+| [[Garli]] || 0.942 || [http://www.bio.utexas.edu/faculty/antisense/garli/Garli.html Garli]
 |-
 | [[gaussian]] || 03 || [http://www.gaussian.com/ www.gaussian.com]
@@ Line 53: / Line 57: @@
 |-
 | [[mpiBlast]] || 1.5.0 || [http://www.ncbi.nlm.nih.gov/ NCBI]
+|-
+| [[MrBayes]] || 3.1.2 || [http://mrbayes.scs.fsu.edu/ mrbayes.scs.fsu.edu]
 |-
 | [[NAMD]] || 2.6 || [http://www.ks.uiuc.edu/Research/namd/ www.ks.uiuc.edu]