Difference between revisions of "Installed Software"
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| [[hypre]] || 2.0.0 || [http://www.llnl.gov/casc/hypre/software.html Lawrence Livermore National Labs] | | [[hypre]] || 2.0.0 || [http://www.llnl.gov/casc/hypre/software.html Lawrence Livermore National Labs] | ||
|- | |- | ||
| − | | [[GULP]] || 3 | + | | [[GULP]] || 3.1 || [https://www.ivec.org/GULP/ www.ivec.org] |
|- | |- | ||
| [[Gromacs]] || 3.3.1 || [http://www.gromacs.org/ www.gromacs.org] | | [[Gromacs]] || 3.3.1 || [http://www.gromacs.org/ www.gromacs.org] | ||
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| [[Ansys]] || 10.0 || [http://www.ansys.com/ www.ansys.com] | | [[Ansys]] || 10.0 || [http://www.ansys.com/ www.ansys.com] | ||
|- | |- | ||
| − | | [[mpiBlast]] || 1. | + | | [[mpiBlast]] || 1.5.0 || [http://www.ncbi.nlm.nih.gov/ NCBI] |
|- | |- | ||
| [[ccp4]] || 6.0.2 || [http://www.ccp4.ac.uk/main.html www.ccp4.ac.uk] | | [[ccp4]] || 6.0.2 || [http://www.ccp4.ac.uk/main.html www.ccp4.ac.uk] | ||
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| [[Ensight]] || 8.2 || [http://www.ensight.com/ www.ensight.com] | | [[Ensight]] || 8.2 || [http://www.ensight.com/ www.ensight.com] | ||
|- | |- | ||
| − | | [[cnssolve]] || 1. | + | | [[cnssolve]] || 1.2 || [http://cns.csb.yale.edu/v1.1/ cns.csb.yale.edu] |
|- | |- | ||
| − | | [[dlpoly]] || 3.0. | + | | [[dlpoly]] || 3.0.7 || [http://www.cse.clrc.ac.uk/ccg/software/DL_POLY/index.shtml www.cse.clrc.ac.uk] |
|- | |- | ||
| − | | [[dock]] || 6. | + | | [[dock]] || 6.1 || [http://dock.compbio.ucsf.edu/ dock.compbio.ucsf.edu] |
|- | |- | ||
| [[Eman]] || 1.8 || [http://blake.bcm.tmc.edu/eman/ blake.bcm.tms.edu] | | [[Eman]] || 1.8 || [http://blake.bcm.tmc.edu/eman/ blake.bcm.tms.edu] | ||
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| [[Fragstats]] || 2.0 || [http://www.umass.edu/landeco/research/fragstats/fragstats.html www.umass.edu] | | [[Fragstats]] || 2.0 || [http://www.umass.edu/landeco/research/fragstats/fragstats.html www.umass.edu] | ||
|- | |- | ||
| − | | [[FSL]] || 3.3 || [http://www.fmrib.ox.ac.uk/fsl/ www.fmrib.ox.ac.uk] | + | | [[FSL]] || 3.3.11 || [http://www.fmrib.ox.ac.uk/fsl/ www.fmrib.ox.ac.uk] |
|- | |- | ||
| [[Geant]] || 4.8.2 || [http://geant4.web.cern.ch/geant4/ geant4.web.cern.ch] | | [[Geant]] || 4.8.2 || [http://geant4.web.cern.ch/geant4/ geant4.web.cern.ch] | ||
| Line 50: | Line 50: | ||
| [[NAMD]] || 2.6 || [http://www.ks.uiuc.edu/Research/namd/ www.ks.uiuc.edu] | | [[NAMD]] || 2.6 || [http://www.ks.uiuc.edu/Research/namd/ www.ks.uiuc.edu] | ||
|- | |- | ||
| − | | [[R]] || 2. | + | | [[R]] || 2.5.0 || [http://www.r-project.org www.r-project.org] |
|- | |- | ||
| − | | [[Rosetta]] || 2.1. | + | | [[Rosetta]] || 2.1.2 || [https://www.rosettacommons.org/ www.rosettacommons.org] |
|- | |- | ||
| [[Siesta]] || 2.0 || [http://www.uam.es/departamentos/ciencias/fismateriac/siesta/ www.uam.es] | | [[Siesta]] || 2.0 || [http://www.uam.es/departamentos/ciencias/fismateriac/siesta/ www.uam.es] | ||
| Line 58: | Line 58: | ||
| [[VASP]] || 4.6.28 || [http://cms.mpi.univie.ac.at/vasp/ cms.mpi.univie.ac.at] | | [[VASP]] || 4.6.28 || [http://cms.mpi.univie.ac.at/vasp/ cms.mpi.univie.ac.at] | ||
|- | |- | ||
| − | | [[Matlab]] || 7. | + | | [[Matlab]] || 7.6 || [http://www.mathworks.com www.mathworks.com] |
|- | |- | ||
| − | | [[Blender]] || 2. | + | | [[Blender]] || 2.45 || [http://www.blender.org www.blender.org] |
|- | |- | ||
| − | | [[AUTO3DEM]] || | + | | [[AUTO3DEM]] || 3.05 || [http://cryoem.ucsd.edu/programs.shtm cryoem.ucsd.edu] |
|- | |- | ||
| [[CMSSW]] || 2_0_6 || [https://twiki.cern.ch/twiki/bin/view/CMS CMS Software Twiki] | | [[CMSSW]] || 2_0_6 || [https://twiki.cern.ch/twiki/bin/view/CMS CMS Software Twiki] | ||
Revision as of 16:26, 30 May 2008
The following is a list of the installed software packages maintained at the UF HPC Center
Software
| Software | Version | Home Website |
|---|---|---|
| hypre | 2.0.0 | Lawrence Livermore National Labs |
| GULP | 3.1 | www.ivec.org |
| Gromacs | 3.3.1 | www.gromacs.org |
| Amber | 9 | amber.scripps.edu |
| gaussian | 03 | www.gaussian.com |
| Abaqus | 6.6-1 | www.abaqus.com |
| Adina | 8.3 | www.adina.com |
| Ansys | 10.0 | www.ansys.com |
| mpiBlast | 1.5.0 | NCBI |
| ccp4 | 6.0.2 | www.ccp4.ac.uk |
| Crystal | 1.0.2 | |
| Ensight | 8.2 | www.ensight.com |
| cnssolve | 1.2 | cns.csb.yale.edu |
| dlpoly | 3.0.7 | www.cse.clrc.ac.uk |
| dock | 6.1 | dock.compbio.ucsf.edu |
| Eman | 1.8 | blake.bcm.tms.edu |
| PWscf | 3.0 | www.pwscf.org |
| Fragstats | 2.0 | www.umass.edu |
| FSL | 3.3.11 | www.fmrib.ox.ac.uk |
| Geant | 4.8.2 | geant4.web.cern.ch |
| meme | 3.0.13 | meme.sdsc.edu |
| metis | 4.0 | glaros.dtc.umn.edu |
| NAMD | 2.6 | www.ks.uiuc.edu |
| R | 2.5.0 | www.r-project.org |
| Rosetta | 2.1.2 | www.rosettacommons.org |
| Siesta | 2.0 | www.uam.es |
| VASP | 4.6.28 | cms.mpi.univie.ac.at |
| Matlab | 7.6 | www.mathworks.com |
| Blender | 2.45 | www.blender.org |
| AUTO3DEM | 3.05 | cryoem.ucsd.edu |
| CMSSW | 2_0_6 | CMS Software Twiki |
| SAS | 9.1 | SAS |
| Stata | 10 | Stata |
Libraries
| Library | Version | Compiler | Location |
|---|---|---|---|
| FFTW | 2.1.5 | Intel | /opt/intel/fftw/2.1.5/lib |