Difference between revisions of "Installed Software"

Revision as of 16:21, 16 June 2011

The following is a list of the installed software packages maintained at the UF HPC Center.

List updated 15 June 2011.

Software	Version	Home Website
Abaqus	6.6-1, 6.9-2
ADMB	9.1, 10.0
Amber	8,9,10,11	amber.scripps.edu
Ansys	10.0	www.ansys.com
antlr	3.1.3
bioscope	1.0.1, 1.2.1
Blast	2.2.24
Boost	1.37.0, 1.46.1
Charmm	35b2
Circuit
CPMD	3.11.1	www.cpmd.org
Crystal	1.0.2
dar	2.3.9
denovo	2.5.3, 2.6
Desmond	2.4.2.1	www.deshawresearch.com/resources_desmond.html
dlpoly	3.0.9	www.cse.clrc.ac.uk
dock	6.3, 6.4	dock.compbio.ucsf.edu
espresso	3.0, 3.2.2, 4.0.4
fluent	6.3.26
gadget	2.0.4, 2.0.5
gaussian	03,09	www.gaussian.com
Gromacs	4.0.4, 4.0.7	www.gromacs.org
hypre	2.0.0	Lawrence Livermore National Labs
Inelastica	1.1
madness
Matlab	2009b	www.mathworks.com
meep	0.10.0, 0.20.3
meme	3.0.13, 4.3.0
metis	4.0	glaros.dtc.umn.edu
mira	3.2.0
MrBayes	3.1.2	mrbayes.scs.fsu.edu
NAMD	2.7b2	www.ks.uiuc.edu
netcdf	3.6.3, 4.1.2
NWChem	6.0	http://www.nwchem-sw.org
OpenFOAM	1.7.1
papi	4.1.2.1
pdt	3.16
petsc	2.3.3-p8, 3.0.0-p12
pqs	3.3-19
pyopencl	0.92
python	2.5.1, 2.6.4, 2.6.5
Rosetta	2.1.1, 2.1.2	www.rosettacommons.org
rsm	2961
samtools	0.1.16
SAS	9.1, 9.2	SAS
Siesta	2.0, 2.0.2, 3.0b	www.uam.es
Stata	10	Stata
tau	2.20.1
tuxedo
VASP	4.6.34,5.2.0	cms.mpi.univie.ac.at
vmd	1.9
weka	3.6.2

Many versions available. /scratch/ufhpc/osg/app/etc/grid3-locations.txt may have an up-to-date list. Or look underneath /scratch/ufhpc/osg/app/cmssoft.

@@ Line 91: / Line 91: @@
 |-
 | [[rsm]] || 2961 ||
+|-
+| [[samtools]] || 0.1.16 ||
 |-
 | [[SAS]] || 9.1, 9.2 || [http://www.sas.com SAS]