Difference between revisions of "Infernal"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
|||
| Line 1: | Line 1: | ||
| − | [[Category:Software]][[Category:Biology]] | + | [[Category:Software]][[Category:Biology]][[Category:Sequence Alignment]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|infernal}} | |{{#vardefine:app|infernal}} | ||
Revision as of 18:16, 6 June 2022
Description
Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. It is an implementation of a special case of profile stochastic context-free grammars called covariance models (CMs). A CM is like a sequence profile, but it scores a combination of sequence consensus and RNA secondary structure consensus, so in many cases, it is more capable of identifying RNA homologs that conserve their secondary structure more than their primary sequence.
Environment Modules
Run module spider infernal to find out what environment modules are available for this application.
System Variables
- HPC_INFERNAL_DIR - installation directory