Ibdne
Revision as of 21:21, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
The IBDNe program estimates the historical effective population size of a homogenous population. The input for the IBDNe program is the set of identity-by-descent (IBD) segments detected by the IBDseq program.
Environment Modules
Run module spider ibdne to find out what environment modules are available for this application.
System Variables
- HPC_IBDNE_DIR - installation directory
- HPC_IBDNE_BIN - executable directory
Citation
If you publish research that uses ibdne you have to cite it as follows:
S R Browning and B L Browning (2015). Accurate non-parametric estimation of recent effective population size from segments of identity by descent. American Journal of Human Genetics 97(3):404-418. doi:10.1016/j.ajhg.2015.07.012