Difference between revisions of "Ibdne"
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(Created page with "Category:SoftwareCategory:BiologyCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|ibdne}} |{{#vardefine:url|http://faculty.washington.edu/browning/i...") |
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==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 19:37, 23 February 2018
Description
The IBDNe program estimates the historical effective population size of a homogenous population. The input for the IBDNe program is the set of identity-by-descent (IBD) segments detected by the IBDseq program.
Environment Modules
Run module spider ibdne to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:ibdne}}_DIR - installation directory
- HPC_{{#uppercase:ibdne}}_BIN - executable directory
Citation
If you publish research that uses ibdne you have to cite it as follows:
S R Browning and B L Browning (2015). Accurate non-parametric estimation of recent effective population size from segments of identity by descent. American Journal of Human Genetics 97(3):404-418. doi:10.1016/j.ajhg.2015.07.012