Difference between revisions of "ITK"

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__NOTOC__
 
__NOTOC__
 
__NOEDITSECTION__
 
__NOEDITSECTION__
[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
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[[Category:Software]][[Category:Biology]]
 
{|<!--Main settings - REQUIRED-->
 
{|<!--Main settings - REQUIRED-->
 
|{{#vardefine:app|ITK}}
 
|{{#vardefine:app|ITK}}
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|{{#vardefine:testing|}} <!--Enable performance testing/profiling section -->
 
|{{#vardefine:testing|}} <!--Enable performance testing/profiling section -->
 
|{{#vardefine:faq|}} <!--Enable FAQ section -->
 
|{{#vardefine:faq|}} <!--Enable FAQ section -->
|{{#vardefine:citation|}} <!--Enable Reference/Citation section -->
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|{{#vardefine:citation|1}} <!--Enable Reference/Citation section -->
 
|}
 
|}
 
<!-- ########  Template Body ######## -->
 
<!-- ########  Template Body ######## -->
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ITK is an open-source, cross-platform system that provides developers with an extensive suite of software tools for image analysis.  Developed through extreme programming methodologies, ITK employs leading-edge algorithms for registering and segmenting multidimensional data.  
 
ITK is an open-source, cross-platform system that provides developers with an extensive suite of software tools for image analysis.  Developed through extreme programming methodologies, ITK employs leading-edge algorithms for registering and segmenting multidimensional data.  
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
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==Environment Modules==
[[Modules|modules documentation]]
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
*{{#var:app}}
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_LIB - library directory
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* HPC_{{uc:{{#var:app}}}}_INC - include file directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable program directory
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{{#if: {{#var: exe}}|==How To Run==
 
{{#if: {{#var: exe}}|==How To Run==
 
WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}}
 
WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}}
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*'''Q:''' **'''A:'''|}}
 
*'''Q:''' **'''A:'''|}}
 
{{#if: {{#var: citation}}|==Citation==
 
{{#if: {{#var: citation}}|==Citation==
If you publish research that uses {{{app}}} you have to cite it as follows:
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If you publish research that uses ITK you have to cite it as follows:
WRITE CITATION HERE
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T.S. Yoo, M. J. Ackerman, W. E. Lorensen, W. Schroeder, V. Chalana, S. Aylward, D. Metaxas, R. Whitaker. Engineering and Algorithm Design for an Image Processing API: A Technical Report on ITK - The Insight Toolkit. In Proc. of Medicine Meets Virtual Reality, J. Westwood, ed., IOS Press Amsterdam pp 586-592 (2002).
 
|}}
 
|}}

Latest revision as of 19:04, 15 August 2022

Description

ITK website  
ITK is an open-source, cross-platform system that provides developers with an extensive suite of software tools for image analysis. Developed through extreme programming methodologies, ITK employs leading-edge algorithms for registering and segmenting multidimensional data.

Environment Modules

Run module spider ITK to find out what environment modules are available for this application.

System Variables

  • HPC_ITK_DIR - installation directory
  • HPC_ITK_LIB - library directory
  • HPC_ITK_INC - include file directory
  • HPC_ITK_BIN - executable program directory




Citation

If you publish research that uses ITK you have to cite it as follows: T.S. Yoo, M. J. Ackerman, W. E. Lorensen, W. Schroeder, V. Chalana, S. Aylward, D. Metaxas, R. Whitaker. Engineering and Algorithm Design for an Image Processing API: A Technical Report on ITK - The Insight Toolkit. In Proc. of Medicine Meets Virtual Reality, J. Westwood, ed., IOS Press Amsterdam pp 586-592 (2002).