Difference between revisions of "IQ-TREE"
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<!--Modules--> | <!--Modules--> | ||
==Required Modules== | ==Required Modules== | ||
| − | + | <!-- | |
===Serial=== | ===Serial=== | ||
* {{#var:app}} | * {{#var:app}} | ||
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===Parallel (OpenMP)=== | ===Parallel (OpenMP)=== | ||
* intel | * intel | ||
* {{#var:app}} | * {{#var:app}} | ||
| + | --> | ||
===Parallel (MPI)=== | ===Parallel (MPI)=== | ||
| − | * | + | * gcc |
* openmpi | * openmpi | ||
* {{#var:app}} | * {{#var:app}} | ||
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==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
Revision as of 16:23, 18 January 2017
Description
IQ-Tree is a very efficient maximum likelihood phylogenetic software.
Required Modules
Parallel (MPI)
- gcc
- openmpi
- iq-tree
System Variables
- HPC_{{#uppercase:iq-tree}}_DIR - installation directory
Citation
If you publish research that uses iq-tree you have to cite it as follows:
- To cite IQ-TREE please use:
- To cite the ultrafast bootstrap (UFBoot) please use:
- IQ-TREE can use PLL for likelihood computations, if you use "-pll" option please cite: