Difference between revisions of "IQ-TREE"
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| − | + | ;Note: There is no executable named 'iqtree' in this package starting with iq-tree/1.5.3. Use either iqtree-mpi or iqtree-omp-mpi depending on whether an MPI or a hybrid job is to be run. | |
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Revision as of 16:27, 18 January 2017
Description
IQ-Tree is a very efficient maximum likelihood phylogenetic software.
Required Modules
Parallel (MPI)
- gcc
- openmpi
- iq-tree
System Variables
- HPC_{{#uppercase:iq-tree}}_DIR - installation directory
Additional Information
- Note
- There is no executable named 'iqtree' in this package starting with iq-tree/1.5.3. Use either iqtree-mpi or iqtree-omp-mpi depending on whether an MPI or a hybrid job is to be run.
Citation
If you publish research that uses iq-tree you have to cite it as follows:
- To cite IQ-TREE please use:
- To cite the ultrafast bootstrap (UFBoot) please use:
- IQ-TREE can use PLL for likelihood computations, if you use "-pll" option please cite: