Difference between revisions of "IGTP"

From UFRC
Jump to navigation Jump to search
m (Text replacement - "#uppercase" to "uc")
 
Line 44: Line 44:
 
-->
 
-->
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR
+
* HPC_{{uc:{{#var:app}}}}_DIR
* HPC_{{#uppercase:{{#var:app}}}}_BIN
+
* HPC_{{uc:{{#var:app}}}}_BIN
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:21, 6 December 2019

Description

iGTP website  

iGTP is a program designed to help biologists infer species phylogenies from gene phylogenies, using the gene tree parsimony (GTP) approach. The program implements efficient heuristics which allows it to handle large-scale species tree inference under the duplication, duplication-loss, and deep coalescence reconciliation costs.


iGTP provides the following features:

* Allowing unrooted input gene trees
* Providing three-dimensional tree visualization
* Computing reconciliation costs

Required Modules

Serial

  • iGTP

System Variables

  • HPC_IGTP_DIR
  • HPC_IGTP_BIN




Citation

If you publish research that uses iGTP you have to cite it as follows: Ruchi Chaudhary, Mukul S. Bansal, André Wehe, David Fernández-Baca, Oliver Eulenstein, "iGTP: A software package for large-scale gene tree parsimony analysis", BMC Bioinformatics 2010, 11:574.


Validation

  • Validated 4/5/2018