Difference between revisions of "IGTP"
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN |
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:21, 6 December 2019
Description
iGTP is a program designed to help biologists infer species phylogenies from gene phylogenies, using the gene tree parsimony (GTP) approach. The program implements efficient heuristics which allows it to handle large-scale species tree inference under the duplication, duplication-loss, and deep coalescence reconciliation costs.
iGTP provides the following features:
* Allowing unrooted input gene trees * Providing three-dimensional tree visualization * Computing reconciliation costs
Required Modules
Serial
- iGTP
System Variables
- HPC_IGTP_DIR
- HPC_IGTP_BIN
Citation
If you publish research that uses iGTP you have to cite it as follows: Ruchi Chaudhary, Mukul S. Bansal, André Wehe, David Fernández-Baca, Oliver Eulenstein, "iGTP: A software package for large-scale gene tree parsimony analysis", BMC Bioinformatics 2010, 11:574.
Validation
- Validated 4/5/2018