Difference between revisions of "Hmmer2go"
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| − | [[Category:Software]][[Category:Phylogenetics]] | + | [[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] |
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|hmmer2go}} | |{{#vardefine:app|hmmer2go}} | ||
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{{#if: {{#var: exe}}1|==Usage examples== | {{#if: {{#var: exe}}1|==Usage examples== | ||
| − | < | + | <code>$ module load hmmer2go/0.18.1</code> |
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| + | <code>$ hmmer2go getorf -i /path/to/genes.fasta -o /current/dir/or/path/to/genes_orfs.faa</code> | ||
Latest revision as of 18:18, 15 August 2022
Description
HMMER2GO is a command line application to map DNA sequences, typically transcripts, to Gene Ontology based on the similarity of the query sequences to curated HMM models for protein families represented in Pfam.
Environment Modules
Run module spider hmmer2go to find out what environment modules are available for this application.
System Variables
- HPC_SINGULARITY_IMAGE - singularity directory
Usage examples
$ module load hmmer2go/0.18.1
$ hmmer2go getorf -i /path/to/genes.fasta -o /current/dir/or/path/to/genes_orfs.faa