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hmmcleaner website  

HmmCleaner is a tool to remove alignment and sequencing error containing segments from multiple sequence alignments (MSA) using profile hidden Markov models (pHMM). This tool is based on Bio::MUST modules and integrates into MUST environment.

Environment Modules

Run module spider hmmcleaner to find out what environment modules are available for this application.

System Variables

  • HPC_HMMCLEANER_DIR - installation directory
  • HPC_HMMCLEANER_BIN - executable directory