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hecaton website  

Hecaton is a framework specifically designed for plant genomes that detects copy number variants (CNVs) using short paired-end Illumina reads. CNVs are called by integrating existing structural variant callers through a machine-learning model and several custom post-processing scripts.

Environment Modules

Run module spider hecaton to find out what environment modules are available for this application.

System Variables

  • HPC_HECATON_DIR - installation directory
  • HPC_HECATON_BIN - executable directory