Hapsembler
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Description
Hapsembler is a haplotype-specific genome assembly toolkit that is designed for genomes that are rich in SNPs and other types of polymorphism. Hapsembler can be used to assemble reads from a variety of platforms including Illumina and Roche/454.
The Hapsembler pipeline is described in contain three main stages:
- error correction
- genome assembly
- scaffolding
Required Modules
System Variables
- HPC_{{#uppercase:hapsembler}}_DIR