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humann website  

HUMAnN 3.0 is the next iteration of HUMAnN, the HMP Unified Metabolic Analysis Network. HUMAnN is a method for efficiently and accurately profiling the abundance of microbial metabolic pathways and other molecular functions from metagenomic or metatranscriptomic sequencing data.

Environment Modules

Run module spider humann to find out what environment modules are available for this application.

System Variables

  • HPC_HUMANN_DIR - installation directory
  • HPC_HUMANN_BIN - executable directory
  • HPC_HUMANN_REF - database directory


If you publish research that uses humann you have to cite it as follows:

Francesco Beghini, Lauren J McIver, Aitor Blanco-Mìguez, Leonard Dubois, Francesco Asnicar, Sagun Maharjan, Ana Mailyan, Andrew Maltez Thomas, Paolo Manghi, Mireia Valles-Colomer, George Weingart, Yancong Zhang, Moreno Zolfo, Curtis Huttenhower, Eric A Franzosa, Nicola Segata.

Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3

eLife 2021;10:e65088