Difference between revisions of "HOMER"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|homer}} |{{#vardefine:url|http://biowhat.ucsd.edu/homer/}} ...") |
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Revision as of 17:54, 5 April 2018
Description
HOMER (Hypergeometric Optimization of Motif EnRichment) is a suite of tools for Motif Discovery and next-gen sequencing analysis. It is a collection of command line programs for unix-style operating systems written in Perl and C++. HOMER was primarily written as a de novo motif discovery algorithm and is well suited for finding 8-20 bp motifs in large scale genomics data. HOMER contains many useful tools for analyzing ChIP-Seq, GRO-Seq, RNA-Seq, DNase-Seq, Hi-C and numerous other types of functional genomics sequencing data sets.
Required Modules
Serial
- homer
System Variables
- HPC_{{#uppercase:homer}}_DIR
Validation
- Validated 4/5/2018