Difference between revisions of "GroopM"

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(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|groopm}} |{{#vardefine:url|https://github.com/Ecogenomic...")
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
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* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
  
 
<!--Configuration-->
 
<!--Configuration-->

Latest revision as of 21:20, 6 December 2019

Description

groopm website  

GroopM is a metagenomic binning toolset. It leverages spatio-temoral dynamics (differential coverage) to accurately (and almost automatically) extract population genomes from multi-sample metagenomic datasets.

Environment Modules

Run module spider groopm to find out what environment modules are available for this application.

System Variables

  • HPC_GROOPM_DIR - installation directory
  • HPC_GROOPM_BIN - executable directory




Citation

If you publish research that uses groopm you have to cite it as follows:

https://peerj.com/articles/603/