Difference between revisions of "GramCluster"
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Latest revision as of 16:57, 10 June 2022
Description
GramCluster is a fast and accurate progressive clustering algorithm that relies on a grammar-based sequence distance and is particularly useful in clustering large datasets.
Environment Modules
Run module spider gramcluster to find out what environment modules are available for this application.
System Variables
- HPC_GRAMCLUSTER_DIR - installation directory
Citation
If you publish research that uses gramcluster you have to cite it as follows:
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences D. J. Russell, S. F. Way, A. K. Benson, and K. Sayood BMC Bioinformatics 2010, 11:601