Difference between revisions of "GramCluster"

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==System Variables==
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
{{#if: {{#var: conf}}|==Configuration==
{{#if: {{#var: conf}}|==Configuration==

Revision as of 21:21, 6 December 2019


gramcluster website  

GramCluster is a fast and accurate progressive clustering algorithm that relies on a grammar-based sequence distance and is particularly useful in clustering large datasets.

Required Modules


  • gramcluster

System Variables

  • HPC_GRAMCLUSTER_DIR - installation directory


If you publish research that uses gramcluster you have to cite it as follows:

A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences D. J. Russell, S. F. Way, A. K. Benson, and K. Sayood BMC Bioinformatics 2010, 11:601


  • Validate 4/5/2018