Difference between revisions of "GenotypeHarmonizer"

Latest revision as of 19:01, 12 August 2022

Description

The Genotype Harmonizer is an easy to use command-line tool that allows harmonization of genotype data stored using different file formats with different and potentially unknown strands.

Environment Modules

Run module spider GenotypeHarmonizer to find out what environment modules are available for this application.

System Variables

HPC_GENOTYPEHARMONIZER_DIR - installation directory
HPC_GENOTYPEHARMONIZER_BIN - executable directory
HPC_GENOTYPEHARMONIZER_DOC - documentation directory
HPC_GENOTYPEHARMONIZER_EXE - example directory

Citation

If you publish research that uses GenotypeHarmonizer you have to cite it as follows:

https://bmcresnotes.biomedcentral.com/articles/10.1186/1756-0500-7-901

@@ Line 1: / Line 1: @@
-[[Category:Software]][[Category:Biology]][[Category:Bioinformatics]]
+[[Category:Software]][[Category:Biology]]
 {|<!--CONFIGURATION: REQUIRED-->
 |{{#vardefine:app|GenotypeHarmonizer}}
@@ Line 21: / Line 21: @@
 <!--Modules-->
-==Required Modules==
+==Environment Modules==
+Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
-===Serial===
-* {{#var:app}}
-<!--
-===Parallel (OpenMP)===
-* intel
-* {{#var:app}}
-===Parallel (MPI)===
-* intel
-* openmpi
-* {{#var:app}}
--->
 ==System Variables==
-* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
-* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
+* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
-* HPC_{{#uppercase:{{#var:app}}}}_DOC - documentation directory
+* HPC_{{uc:{{#var:app}}}}_DOC - documentation directory
-* HPC_{{#uppercase:{{#var:app}}}}_EXE - example directory
+* HPC_{{uc:{{#var:app}}}}_EXE - example directory
 <!--Configuration-->
 {{#if: {{#var: conf}}|==Configuration==