Genomic-fluidity
Revision as of 21:21, 6 December 2019 by Moskalenko (talk | contribs) (Text replacement - "#uppercase" to "uc")
Description
A collection of Perl scripts to calculate gene-level similarity among annotated genomes as used in Kislyuk et al. BMC Genomics 12: 32 (2011). The scripts can be executed from the command line and the only dependencies are BioPerl and NCBI BLAST.
Environment Modules
Run module spider genomic-fluidity to find out what environment modules are available for this application.
System Variables
- HPC_GENOMIC-FLUIDITY_DIR - installation directory
- HPC_GENOMIC-FLUIDITY_BIN - executable directory
- HPC_GENOMIC-FLUIDITY_DOC - documentation directory