Difference between revisions of "Genesum"

From UFRC
Jump to navigation Jump to search
(Created page with "Category:SoftwareCategory:BiologyCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|genesum}} |{{#vardefine:url|https://github.com/Kingsford-Grou...")
 
m (Text replacement - "#uppercase" to "uc")
 
(One intermediate revision by one other user not shown)
Line 24: Line 24:
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 +
* HPC_{{uc:{{#var:app}}}}_BIN - execution directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:21, 6 December 2019

Description

genesum website  

This is a tool to create gene-level summaries of transcript expression estimates. You provide the tool with an annotation file (in GTF/GFF format) and a set of transcript-level estimates, and it aggregates these expression estimates to the gene-level.

Environment Modules

Run module spider genesum to find out what environment modules are available for this application.

System Variables

  • HPC_GENESUM_DIR - installation directory
  • HPC_GENESUM_BIN - execution directory