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gengen website  

GenGen is a suite of free software tools to facilitate the analysis of high-throughput genomics data sets. The package is currently a work-in-progress and infrequently updated.

Required Modules


  • gcc/5.2.0
  • gengen

System Variables

  • HPC_GENGEN_DIR - installation directory
  • HPC_GENGEN_EXE - example directory
  • HPC_GENGEN_DOC - documentation directory


If you publish research that uses gengen you have to cite it as follows:

Wang K, Li M, Bucan M. Pathway-based approaches for analysis of genome-wide association studies. American Journal of Human Genetics, 81:1278-1283, 2007

Wang K, Li M, Hakonarson H. Analysing biological pathways from genome-wide association studies. Nature Reviews Genetics, 11:843-854, 2010