https://help.rc.ufl.edu/mediawiki/index.php?title=GTOOL&feed=atom&action=historyGTOOL - Revision history2024-03-19T05:54:41ZRevision history for this page on the wikiMediaWiki 1.35.13https://help.rc.ufl.edu/mediawiki/index.php?title=GTOOL&diff=20573&oldid=prevMaxprok: Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|gtool}} |{{#vardefine:url|https://www.well.ox.ac.uk/~cfreeman/software/gwas/..."2020-09-10T12:51:02Z<p>Created page with "<a href="/doc/Category:Software" title="Category:Software">Category:Software</a><a href="/doc/Category:Phylogenetics" title="Category:Phylogenetics">Category:Phylogenetics</a> {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|gtool}} |{{#vardefine:url|https://www.well.ox.ac.uk/~cfreeman/software/gwas/..."</p>
<p><b>New page</b></p><div>[[Category:Software]][[Category:Phylogenetics]]<br />
{|<!--CONFIGURATION: REQUIRED--><br />
|{{#vardefine:app|gtool}}<br />
|{{#vardefine:url|https://www.well.ox.ac.uk/~cfreeman/software/gwas/gtool.html}}<br />
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|{{#vardefine:job|}} <!--JOB SCRIPTS--><br />
|{{#vardefine:policy|}} <!--POLICY--><br />
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GTOOL can be used to create subsets of datasets using the -S option in conjunction with several sub-options. These options are illustrated in the following examples. In these examples the genotype and sample files to be subsetted are specified using the --g and --s options. The genotype and sample files should be in the format specified by the FILE FORMAT webpage.<br />
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==Environment Modules==<br />
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.<br />
==System Variables==<br />
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory<br />
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory<br />
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* HPC_{{uc:{{#var:app}}}}_EXE - example directory<br />
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{{#if: {{#var: conf}}|==Configuration==<br />
See the [[{{PAGENAME}}_Configuration]] page for {{#var: app}} configuration details.<br />
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{{#if: {{#var: exe}}|==Additional Information==<br />
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WRITE_ADDITIONAL_INSTRUCTIONS_ON_RUNNING_THE_SOFTWARE_IF_NECESSARY<br />
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{{#if: {{#var: job}}|==Job Script Examples==<br />
See the [[{{PAGENAME}}_Job_Scripts]] page for {{#var: app}} Job script examples.<br />
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{{#if: {{#var: policy}}|==Usage Policy==<br />
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WRITE USAGE POLICY HERE (Licensing, usage, access).<br />
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{{#if: {{#var: testing}}|==Performance==<br />
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WRITE_PERFORMANCE_TESTING_RESULTS_HERE<br />
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*'''Q:''' **'''A:'''|}}<br />
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{{#if: {{#var: citation}}|==Citation==<br />
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__NOTOC____NOEDITSECTION__</div>Maxprok