Difference between revisions of "GTDBTk"

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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|gtdbtk}} |{{#vardefine:url|https://github.com/Ecogenomics/GtdbTk}} <!--CONFI...")
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Revision as of 21:21, 6 December 2019

Description

gtdbtk website  

GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. It is computationally efficient and designed to work with recent advances that allow hundreds or thousands of metagenome-assembled genomes (MAGs) to be obtained directly from environmental samples. It can also be applied to isolate and single-cell genomes.

Environment Modules

Run module spider gtdbtk to find out what environment modules are available for this application.

System Variables

  • HPC_GTDBTK_DIR - installation directory




Citation

If you publish research that uses gtdbtk you have to cite it as follows:

https://github.com/Ecogenomics/GtdbTk#references