Difference between revisions of "GROMACS"
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(Created page with "Category:SoftwareCategory:Computational ChemistryCategory:Molecular Dynamics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|gromacs}} |{{#vardefine:url|http://...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_INC - header file directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_LIB - library directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:20, 6 December 2019
Description
GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles.
It is primarily designed for biochemical molecules like proteins, lipids and nucleic acids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non-biological systems, e.g. polymers.
Environment Modules
Run module spider gromacs to find out what environment modules are available for this application.
System Variables
- HPC_GROMACS_DIR - installation directory
- HPC_GROMACS_BIN - executable directory
- HPC_GROMACS_INC - header file directory
- HPC_GROMACS_LIB - library directory