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GARLI is a program that performs phylogenetic inference using the maximum-likelihood criterion. Several sequence types are supported, including nucleotide, amino acid and codon. Version 2.0 adds support for partitioned models and morphology-like datatypes. Template:App Location

Garli 2.0 is installed in /apps/garli/2.0

Running the application using modules

To use garli with the environment modules system at HPC the following commands are available:

Get module information for garli:

$module spider garli

Load the default application module:

$module load garli

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

  • HPC_GARLI_DIR - directory where garli is located.