Difference between revisions of "GARLI"
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<!--Main settings - REQUIRED--> | <!--Main settings - REQUIRED--> | ||
| − | |{{#vardefine:app| | + | |{{#vardefine:app|garli}} |
| − | |{{#vardefine:url| | + | |{{#vardefine:url|https://www.nescent.org/wg_garli/Main_Page}} |
<!--Compiler and MPI settings - OPTIONAL --> | <!--Compiler and MPI settings - OPTIONAL --> | ||
|{{#vardefine:intel|}} <!-- E.g. "11.1" --> | |{{#vardefine:intel|}} <!-- E.g. "11.1" --> | ||
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{{#if: {{#var: url}}| | {{#if: {{#var: url}}| | ||
{{App_Description|app={{#var:app}}|url={{#var:url}}}}|}} | {{App_Description|app={{#var:app}}|url={{#var:url}}}}|}} | ||
| − | + | GARLI is a program that performs phylogenetic inference using the maximum-likelihood criterion. Several sequence types are supported, including nucleotide, amino acid and codon. Version 2.0 adds support for partitioned models and morphology-like datatypes. | |
| − | |||
<!--Location--> | <!--Location--> | ||
{{App_Location|app={{#var:app}}|{{#var:ver}}}} | {{App_Location|app={{#var:app}}|{{#var:ver}}}} | ||
| − | + | Garli 2.0 is installed in /apps/garli/2.0 | |
<!-- --> | <!-- --> | ||
{{#if: {{#var: mod}}|==Running the application using modules== | {{#if: {{#var: mod}}|==Running the application using modules== | ||
Revision as of 20:36, 26 October 2011
Description
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GARLI is a program that performs phylogenetic inference using the maximum-likelihood criterion. Several sequence types are supported, including nucleotide, amino acid and codon. Version 2.0 adds support for partitioned models and morphology-like datatypes.
Template:App Location
Garli 2.0 is installed in /apps/garli/2.0
Running the application using modules
To use garli with the environment modules system at HPC the following commands are available:
Get module information for garli:
$module spider garli
Load the default application module:
$module load garli
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_GARLI_DIR - directory where garli is located.